David L. Baillie - Publications

Refereed Journals

Jones MR, Huang JC, Chua SY, Baillie DL, Rose AM. (2012) The atm-1 gene is required for genome stability in Caenorhabditis elegans. Mol Genet Genomics. 2012 Feb 18. [Epub ahead of print]

Boyer JC, Carling CJ, Chua SY, Wilson D, Johnsen B, Baillie D, Branda NR. (2012) Photomodulation of Fluorescent Upconverting Nanoparticle Markers in Live Organisms by Using Molecular Switches. Chemistry. Feb 16. doi: 10.1002/chem.201103767. [Epub ahead of print]

Chu JS, Johnsen RC, Chua SY, Tu D, Dennison M, Marra M, Jones SJ, Baillie DL, Rose AM. (2012) Allelic Ratios and the Mutational Landscape Reveal Biologically Significant Heterozygous SNVs. Genetics. 2012 Jan 31. [Epub ahead of print]

Remote automated multi-generational growth and observation of an animal in low Earth orbit. Oczypok EA, Etheridge T, Freeman J, Stodieck L, Johnsen R, Baillie D, Szewczyk NJ. J R Soc Interface. 2012 Mar 7;9(68):596-9. Epub 2011 Nov 30.

Anbalagan C, Lafayette I, Antoniou-Kourounioti M, Haque M, King J, Johnsen B, Baillie D, Gutierrez C, Rodriguez Martin JA, de Pomerai D. (2012) Transgenic nematodes as biosensors for metal stress in soil pore water samples. Ecotoxicology. 2012 Mar;21(2):439-55. Epub 2011 Oct 30.

Chu JS, Tarailo-Graovac M, Zhang D, Wang J, Uyar B, Tu D, Trinh J, Baillie DL, Chen N. (2012)Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans. Nucleic Acids Res. 2012 Jan;40(1):53-64. Epub 2011 Sep 8.

Ono S, Nomura K, Hitosugi S, Tu DK, Lee JA, Baillie DL, Ono K. (2012) The two actin-interacting protein 1 genes have overlapping and essential function for embryonic development in Caenorhabditis elegans. Mol Biol Cell. 2011 Jul 1;22(13):2258-69. Epub 2011 May 5.

Shin H, Lee H, Fejes AP, Baillie DL, Koo HS, Jones SJ. (2012) Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing. BMC Res Notes. 2011 Feb 8;4:34.

Tarailo-Graovac M, Wang J, Tu D, Baillie DL, Rose AM, Chen N. (2012) Duplication of cyb-3 (cyclin B3) suppresses sterility in the absence of mdf-1/MAD1 spindle assembly checkpoint component in Caenorhabditis elegans. Cell Cycle. 2010 Dec 15;9(24):4858-65. Epub 2010 Dec 15.

  Tarailo-Graovac M, Wang J, Chu JS, Tu D, Baillie DL, Chen N. (2012) Spindle assembly checkpoint genes reveal distinct as well as overlapping expression that implicates MDF-2/Mad2 in postembryonic seam cell proliferation in Caenorhabditis elegans. BMC Cell Biol. 2010 Sep 21;11:71. )

 Cynthia R. Wagner, Lynnette Kuervers, David Baillie, Judith L. Yanowitz (2010) xnd-1 Regulates the Global Recombination Landscape in C. elegans. Nature, In Press (accepted September 2010)

 Giordano-Santini R, Milstein S, Svrzikapa N, Tu D, Johnsen R, Baillie D, Vidal M, Dupuy D. (2010) An antibiotic selection marker for nematode transgenesis. Nat Methods. 2010 Aug 22.

 Chu JS, Baillie DL, Chen N. (2010) Convergent evolution of RFX transcription factors and ciliary genes predated the origin of metazoans. BMC Evol Biol. 2010 May 4;10(1):130.

 Ogura KI, Okada T, Mitani S, Gengyo-Ando K, Baillie DL, Kohara Y, Goshima Y. (2010) Protein phosphatase 2A cooperates with the autophagy-related kinase UNC-51 to regulate axon guidance in Caenorhabditis elegans. Development. 2010 Apr 14.

 Carrie L Simms, David L Baillie (2010) A strawberry notch homolog, let-765/nsh-1, positively regulates lin-3/egf expression to promote RAS-dependent vulval induction in C. elegans. Dev Biol. 2010 May 15;341(2):472-85.

 Allan K Mah, Domena K Tu, Robert C Johnsen, Jeffrey S Chu, Nansheng Chen and David L Baillie (2010) Characterization of the octamer, a cis-regulatory element that modulates excretory cell gene-expression in Caenorhabditis elegans, BMC Molecular Biology. BMC Mol Biol. 2010 Mar 8;11:19.

 Rose AM, O'Neil NJ, Bilenky M, Butterfield YS, Malhis N, Flibotte S, Jones MR, Marra M, Baillie DL, Jones SJ. (2010) Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern. BMC Genomics. 2010 Feb 23;11:131.

 Sleumer MC, Mah AK, Baillie DL, Jones SJ. (2010) Conserved elements associated with ribosomal genes and their trans-splice acceptor sites in Caenorhabditis elegans. Nucleic Acids Res. 2010 May;38(9):2990-3004. Epub 2010 Jan 25.

 Park JO, Pan J, Möen F, Schupp MO, Johnsen R, Baillie DL, Zapf R, Moerman DG, Hutter H. (2010) Characterization of the astacin family of metalloproteases in C. elegans. BMC Dev Biol. 2010 Jan 28;10:14.

 Mah AK, Chew DS, Baillie DL.(2009) Characterizing the function and transcriptional regulation of let-721, A Caenorhabditis elegans homolog of human electron transfering flavoprotein dehydrogenase. MGG. Mol Genet Genomics. 2009 Dec;282(6):555-70.

 Al-Atar U, Fernandes R, Johnsen B, Baillie D, Branda NR. (2009) A photocontrolled molecular switch regulates paralysis in a living organism. J Am Chem Soc. 2009 Nov 11;131(44):15966-7.

 Giacomotto J, Pertl C, Borrel C, Walter MC, Bulst S, Johnsen B, Baillie DL, LochmüH, Thirion C, Sélat L. (2009) Evaluation of the therapeutic potential of carbonic anhydrase inhibitors in two animal models of dystrophin deficient muscular dystrophy. Hum Mol Genet. 2009 Nov 1;18(21):4089-101.

 Vergara IA, Mah AK, Huang JC, Tarailo-Graovac M, Johnsen RC, Baillie DL, Chen N. (2009) Polymorphic segmental duplications in the nematode Caenorhabditis elegans. BMC Genomics. 2009 Jul 21;10:329.

 Meissner B, Warner A, Wong K, Dube N, Lorch A, McKay SJ, Khattra J, Rogalski T, Somasiri A, Chaudhry I, Fox RM, Miller DM 3rd, Baillie DL, Holt RA, Jones SJ, Marra MA, Moerman DG. (2009) An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. PLoS Genet. 2009 Jun;5(6):e1000537

 Jones MR, Chua SY, O'Neil NJ, Johnsen RC, Rose AM, Baillie DL. (2009) High resolution molecular analysis of deficiencies affecting recombination in C. elegans. Mol Genet Genomics.2009 Jul;282(1):37-46.

 Schmidt KL, Marcus-Gueret N, Adeleye A, Webber J, Baillie D, Stringham EG. (2009) The cell migration molecule UNC-53/NAV2 is linked to the ARP2/3 complex by ABI-1. Development. 2009 Feb;136(4):563-74.

 Yamashiro S, Cox EA, Baillie DL, Hardin JD, Ono S(2008) Sarcomeric actin organization is synergistically promoted by tropomodulin, ADF/cofilin, AIP1, and profilin in C. elegans. Journal of Cell Science, Dec 1;121. (Full text)

 Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ. (2008) Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags. BMC Biol. 2008 Jul 8;6:30. (Full text)

 Caruso ME, Jenna S, Bouchecareilh M, Baillie DL, Boismenu D, Halawani D, Latterich M, Chevet E. (2008) GTPase-mediated regulation of the unfolded protein response in Caenorhabditis elegans is dependent on the AAA+ ATPase CDC-48. Mol Cell Biol. Jul; 28(13):4261-74. (Full text)

 Jones MR, Maydan JS, Flibotte S, Moerman DG, Baillie DL. (2007) Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to gene mapping in Caenorhabditis elegans. BMC Genomics. Nov 7;8(1):402. (Full text)

 Desnoyers S, Blanchard PG, St-Laurent JF, Gagnon SN, Baillie DL, Luu-The V. (2007) Caenorhabditis elegans LET-767 is able to metabolize androgens and estrogens and likely shares common ancestor with human types 3 and 12 17beta-hydroxysteroid dehydrogenases. J Endocrinol. Nov;195(2):271-9. (Full text)

 Kurz CL, Shapira M, Chen K, Baillie DL, Tan MW. (2007) Caenorhabditis elegans pgp-5 is involved in resistance to bacterial infection and heavy metal and its regulation requires TIR-1 and a p38 map kinase cascade. Biochem Biophys Res Commun. Nov 16;363(2):438-43. (Full text)

 Mah AK, Armstrong KR, Chew DS, Chu JS, Tu DK, Johnsen RC, Chen NS, Chamberlin HM, Baillie DL ( 2007) Transcriptional Regulation Of AQP-8, A Caenorhabditis elegans Aquaporin Exclusively Expressed In The Excretory System, By The POU Homeobox Transcription Factor CEH-6. J Biol Chem. 282(38):28074-86. (Full text)

 Yang Zhao, Martin Jones, David Baillie, and Ann Rose (2007) Developing an Integrating Biological Dosimeter for Spaceflight. Microgravity Science and Technology.(Full text)

 Peiming Huang, Erin D. Pleasance, Jason S. Maydan, Rebecca Hunt-Newbury, Nigel J. O'Neil, Allan Mah, David L. Baillie, Marco A. Marra, Donald G. Moerman and Steven J. M. Jones (2007) Identification and Analysis of Internal Promoters in Caenorhabditis elegans Operons. Genome Research. (Full text)

 R. Hunt-Newbury, R. Viveriros, R. Johnsen, A. Mah, D. Anastis, L. Fang, E. Halfnight, D. Lee, J. Lin, A. Lorch, S. McKay, H.M. Okada, J. Pan, A.K. Schultx, D. Tu, K. Wong, Z. Zhao, A. Alexeyenko, T. Buerglin, E. Sonnhammer, R. Schnabel, S.J. Jones, M.A. Marra, D.L. Baillie and D. G. Moerman. (2007) High Throughput In Vivo Analysis of Gene Expression in C. Elegans. PLOS Biology. Sep;5(9):e237.(Full text)

 Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabasi AL, Baillie D, Vidal M. (2007) Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol. 25(6):663-668. (Full text)

 Zhongying Zhao, James H. Thomas, Nansheng Chen, Jonathan A. Sheps and David L. Baillie (2007) Comparative Genomics and Adaptive Selection of the ATP-Binding Cassette Gene Family in Caenorhabditis Species. Genetics 175:1407-18. (Full text)

 McGhee, J.D., Sleumer, M.C., Bilenky, M., Wong, K., McKay, S.J., Goszczynski, B., Tian, H., Krich, N.D., Khattra, J., Holt, R.A., Baillie, D.L., Kohara, Y., Marra, M.A., Jones, S.J.M., Moerman, D.G., Robertson, A.G. (2007) The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Developmental Biology 302:627-45. (Full Text)

 Chen, N., Mah, A., Blacque, O.E., Chu, J., Phgora, K., Bakhoum, M.W., Newbury, R.H., Khattra, J., Chan, S., Go, A., Efimenko, E., Johnsen, R., Phirke, P., Swoboda, P., Marra, M., Moerman, D.G., Stein, L.D. (2006) Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics. Genome Biology 7:R126. (Full Text)

 Carre-Pierrat, M., Baillie, D.L., Johnsen, R.C., Granger, L., Segalat, L. (2006) Characterization of the C. elegans G protein-coupled serotonin receptors. Invertebrate Neuroscience 6:189-205. (Full Text)

 Hao, L., Johnsen, R.C., Lauter, G. Baillie, D.L., Burglin, T.R. (2006) Comprehensive analysis of gene expression patterns of hedgehog-related genes. BMC Genomics 7:280. (Full Text)

 Blacque, O.E., Li, C., Inglis, P.N., Esmail, M.A., Ou, G., Mah, A.K., Baillie, D.L., Scholey, J.M., Leroux, M.R. (2006) The WD repeat-containing protein, IFTA-1, is required for retrograde intraflagellar transport. Molecular Biology of the Cell 12:5053-5062. (Full Text)

 Hao, L., Mukherjee, K., Liegeois, S., Baillie, D.L., Labouesse, M., Burglin, T.R. (2006) The hedgehog-related gene qua-1 is required for molting in Caenorhabditis elegans. Developmental Dynamics 235:1469-1481. (Full Text)

 Gallo, M., Mah, A.K., Johnsen, R.C., Rose, A.M., Baillie, D.L. (2006) Caenorhabditis elegans dpy-14: an essential collagen gene with unique expression profile and physiological roles in early development. Molecular Genetics and Genomics 275(6):527-39. (Full Text)

 Polet, D., Lambrechts, A., Ono, K., Mah, A., Peelman, F., Vandekerckhove, J., Baillie, D.L., Ampe, C., Ono, S. (2006) C. elegans expresses three functional profilins in a tissue specific manner. Cell Motil. Cytoskeleton. 63(1):14-28. (Full Text)

 Zhao, Z., Fang, L., Chen, N., Johnsen, R.C., Stein, L., Baillie, D.L. (2005) Distinct regulatory elements mediate similar expression patterns in Caenorhabditis elegans' excretory cell. Journal of Biological Chemistry 280(46):38787-38794. (Full Text)

 Chen, N., Pai, S., Zhao, Z., Mah, A., Newbury, R., Johnsen, R.C., Moerman, D.G., Baillie, D.L., Stein, L.D. (2005) Identification of a nematode chemosensory gene family. PNAS 102(1):146-151. (Full Text)

 Blacque, O.E., Perens, E.A., Boroevich, K.A., Inglis, P.N., Li, C., Warner, A., Khattra, J., Holt, R.A., Ou, G., Mah, A.K., McKay, A.K., Huang, P., Swoboda, P., Jones, S.J.M., Mara, M.A., Moerman, D.G., Baillie, D.L., Shaham, S., Leroux, M.R. (2005) Functional genomics of the cilium, a sensory organelle. Current Biology 15(10):935-941. (Full Text)

 Zhao, Y., Johnsen, R.C., Baillie, D.L., Rose, A.M. (2005) Worms in Space? A model biological dosimeter. Gravitational and Space Biology Bulletin 18(2):11-16. (Full Text)

 Hsiang, T., Baillie, D.L. (2005) Comparison of the yeast proteome to other fungal genomes to find core fungal genes. Journal of Molecular Evolution 60(4):475-483. (Full Text)

 Maciejowski, J., Ahn, J.H., Cipriani, P.G., Killian, D.J., Chaudhary, A.L., Lee, J.I., Voutev, R., Johnsen, R.C., Baillie, D.L., Gunsalus, K.C., Fitch, D.H., Hubbard, E.J. (2005) Autosomal genes of autosomal/X-linked duplicated gene pairs and germline proliferation in C. elegans. Genetics 169:1997-2011. (Full Text)

 Zhao, Z., Sheps, J.A., Ling, V., Fang, L.L., Baillie, D.L. (2004) Expression analysis of ABC Transporters reveals differential functions of tandemly duplicated genes in Caenorhabditis elegans. Journal of Molecular Biology 344(2):409-417. (Full Text)

 Anyanful, A., Ono, K., Johnsen, R.C., Ly, H., Jensen, V., Baillie, D.L., Ono, S. (2004) The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in Caenorhabditis elegans. Journal of Cell Biology 167(4):639-647. (Full Text)

 Zhao, Z., Fang, F.L., Johnsen, R.C., Baillie, D.L. (2004) ATP Binding Cassette Protein E (ABCE) is involved in gene transcription and translation in C. elegans. Biochemical and Biophysical Research Communications 323(1):104-111. (Full Text)

 Fan, Y., Esmail, M.A., Ansley, S.J., Blacque, O.E., Boroevich, K., Ross, A.J., Moore, S.J., Badano, J.L., May-Simera, H., Compton, D.S., Green, J.S., Lewis, R.A., van Haelst, M.M., Parfrey, P.S., Baillie, D.L., Beales, P.L., Katsanis, N., Davidson, W.S., Leroux, M.R. (2004) Mutations in a member of the ras superfamily of small GTP-binding proteins causes Bardet-Biedl syndrome. Nature Genetics 36(9):989-993. (Full Text)

 Henricson, A., Sonnhammer, E.L.L., Baillie, D.L., Vaz Gomes, A. (2004) Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs. BMC Genomics 5(1):85. (Full Text)

 Blacque, O.E., Reardon, M.J., McCarthy, J., Li, C., Mahjoub, M.R., Ansley, S.J., Badano, J.L., Mah, A.K., Beales, P.L., Davidson, W.S., Johnsen, R.C., Audeh, M., Plasterk, R.H.A., Baillie, D.L., Katsanis, N., Quarmby, L.M., Wicks, S.R., Leroux, M.I.R. (2004) Loss of C. elegans BBS-7 and BBS-8 protein function results in cilia defects and compromised intraflagellar transport of PSM-5/polaris and CHE-11. Genes and Development. 18(13):1630-1642. (Full Text)

 Kao, G., Tuck, S., Baillie, D.L., Sundaram, M.V. (2004) C. elegans SUR-6/PR55 cooperates with LET-92/protein phosphatase 2A and promotes Raf activity independently of inhibitory Akt phosphorylation sites. Development. 131(4):755-65. (Full Text)

 Hsiang, T., Baillie, D.L. (2004) Recent progress, developments and issues in comparative fungal genomics. Can. J. Plant Pathol. 26:19-30. (Full Text)

 Sheps, J.A., Ralph, S., Zhao, Z., Baillie, D.L., Ling, V. (2004) The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes. Genome Biology. 5:R15. (Full Text)

 Wei, H.C., Sanny, J., Shu, H., Baillie, D.L., Brill, J.A., Price, J.V., Harden, N. (2003) The Sac1 lipid phosphatase regulates cell shape change and the JNK cascade during dorsal closure in Drosophila. Curr Biol. Oct 28;13(21):1882-7. (Full Text)

 Kuervers, L.M., Jones, C.L., O'Neil, N.J., Baillie, D.L. (2003) The sterol modifying enzyme LET-767 is essential for growth, reproduction and development in Caenorhabditis elegans. Mol Genet Genomics. Oct;270(2):121-31. Epub 2003 Aug 05. (Full Text)

 Severson, A.F., Baillie, D.L., Bowerman, B. (2002) A Formin Homology Protein and a Profilin Are Required for Cytokinesis and Arp2/3-Independ ent Assembly of Cortical Microfilaments in C. elegans. Curr Biol. Dec 23;12(24):2066-75. (Full Text)

 Furuta, T., Baillie, D.L., Schumacher, J.M. (2002) Caenorhabditis elegans Aurora A kinase AIR-1 is required for postembryonic cell divisions and germline development. Genesis Dec;34(4):244-50. (Full Text)

 Baillie, D.L. (2002) Genomes in motion. Genome Res . Jun;12(6):843. (Full Text)

 Grishok, A., Pasquinelli, A.E., Conte, D., Li, N., Parrish, S., Ha, I., Baillie, D.L., Fire, A., Ruvkun, G., Mello (2001) Genes and Mechanisms Related to RNA Interference Regulate Expression of the Small Temporal RNAs that Control C. elegans Developmental Timing. Cell. Jul 13;106(1):23-34. (Full Text)

 Jones, S.J.M., Riddle, D., Pouzyrev, A.T., Velculescu, V., Hillier, L., Eddy, S.R., Baillie, D.L., Waterston, R., Marra, M.A. (2001) Changes in gene expression associated with developmental arrest and longevity in C. elegans. Genome Research. Aug;11(8):1346-52. (Full Text)

 Hong, L., Elbl, T., Ward, J., Franzinz-Armstrong, C., Rybicka, K.K., Gatewood, B., Baillie, D.L., Bucher, E.A. (2001) Mup-4 is a transmembrane protein with functions in epithelial cell adhesion at hemidesmosomes and transmission of muscle forces in Caenorhabditis elegans. J Cell Biol. Jul 23;154(2):403-414 (Full Text)

 McRory, J.E., Santi, C.M., Hamming, K.S., Mezeyova, J., Sutton, K.G., Baillie D.L., Stea, A., Snutch, T.P. (2001) Molecular and functional characterization of a family of rat brain T-type calcium channels. J. Biol. Chem. Feb 9;276(6):3999-4011.(Full Text)

 Legouis, R., Gansmuller, A., Sookhareea, S., Bosher, J., Baillie, D.L., Labouesse, M. (2000) LET-413 is a basolateral protein required for assembly of adherens junctions in C. elegans. Nature Cell Biology 2(7):415-422. (Full Text)

 Baillie, D.L., Rose, A.M. (2000) WABA a success: A New Tool For Comparative Genomics. Genome Research 10(8):1070-1072. (Solicited review) (Full Text)

 Roubin R, Naert K, Popovici C, Vatcher G, Coulier F, Thierry-Mieg J, Pontarotti P, Birnbaum D, Baillie D, Thierry-Mieg D. (1999) let-756, a C. elegans fgf essential for worm development. Oncogene (48):6741-6747. (Full Text)

 Ono, S., Baillie, D.L., Benian, G.M. (1999) UNC-60B, an ADF/Cofilin Family Protein, Is Required for Proper Assembly of Actin into Myofibrils in Caenorhabditis elegans Body Wall Muscle. J. Cell Biol. (145) 3: 491-502. (Full Text)

 Thacker, C., Marra, M.A., Jones, A., Baillie, D.L., Rose, A.M. (1999) Functional Genomics in C. elegans: An approach involving the comparisons of Sequences from Related Nematodes. Genome Research (9) 348-359. (Full Text)

 Vatcher, G., Marra, M.A., Baillie, D.L. (1999) Identification and characterization of a serine hydroxymethyltransferase isoform in Caenorhabditis briggsae. Gene. Apr 230(2): 137-144.(Full Text)

 Stewart, H.I., O'Neil, N.J., Janke, D.J., Franz, N.W., Chamberlin, H., Howell, A.M. Gilchrist, E.J., Ha, T., Kuervers, L.M., Vatcher, G., Baillie, D.L. (1998) Lethal mutations defining 112 complementation groups in a 4.5 megabase sequenced region of Caenorhabditis elegans chromosome III. Mol. Gen. Genetics, 260(3/2): 280-288. (Full Text)

 Vatcher, G.P., Thacker, C.M., Kaletta, T., Schnabel, H., Schnabel, R., Baillie, D.L. (1998) Serine Hydroxymethyltransferase is Maternally Essential in Caenorhabditis elegans. J.B.C., 273(11): 6066-6073. (Full Text)

 Janke, D.L., Jacqueline E. Schein, J.E., Ha, T., Franz, N.W., O'Neil, N.J., Vatcher, G.P., Stewart, H.I., Kuervers, L.M., Baillie, D.L., Rose, A.M. (1997) Interpreting a sequenced genome: toward a cosmic transgenic library of Caenorhabditis elegans. Genome Research 7(10): 974-985. (Full Text)

 Chamberlin, H.M., Palmer, R.P., Newman, A.P., Sternberg, P.W., Baillie, D.L.,Thomas, J.H. (1997) The PAX Gene egl-38 Mediates Developmental Patterning in Caenorhabditis elegans. Development, 124: 3919-3928. (Full Text)

 Zhen, M., Schein, J.E., Baillie, D.L., Candido, P.M. (1996) An essential ubiquitin-conjugating enzyme with tissue and developmental specificity in the nematode Caenorhabditis elegans. EMBO, 15(13): 3229-3237. (Full Text)

 Jones, S., Baillie, D.L. (1995) Characterization of the let-653 gene in Caenorhabditis elegans. Mol. Gen. Genet. 248(6): 719-726. (Full Text)

 Clark, D.V., Suleman, D.S., Beckenbach, K.A., Gilchrist, E.J., Baillie, D.L. (1995) Molecular cloning and characterization of the dpy-20 gene of Caenorhabditis elegans. Mol. Gen. Genet. 247: 367-378. (Full Text)

 Marra, M.A., Baillie, D.L. (1994) Recovery of duplications by drug resistance selection in Caenorhabditis elegans. Genome 37(4): 701-705. (Full Text)

 McKim, K.S., Matheson, C., Marra, M.A., Wakarchuk, M.F., Baillie, D.L. (1994) The C. elegans unc-60 gene encodes proteins homologous to a family of actin binding proteins. Mol. Gen. Genet. 242: 346-357. (Full Text)

 Barbazuk, W.B., Johnsen, R.C., Baillie, D.L. (1994) The generation and genetic analysis of suppressors of lethal mutations in the Caenorhabditis elegans rol-3(V) gene. Genetics 136: 129-143. (Full Text)

 Schein, J.E., Marra, M.A., Benian, G.M., Fields, C., Baillie, D.L. (1993) The use of deficiencies to determine essential gene content in the let-56 - unc-22 region of Caenorhabditis elegans. Genome 36: 1148-1156. (Full Text)

 Amaar, Y.G., Baillie, D.L. (1993) Cloning and characterization of the C. elegans histidyl-tRNA synthetase gene. Nucleic Acid Research 21: 4344-4347. (Full Text) (2)

 Lésque, C.A., Beckenbach, K., Baillie, D.L., Rahe, J.E. (1993) Pathogenicity and DNA restriction fragment length polymorphisms of isolates of Pythium spp. from glyphosate-treated seedlings. Mycological Research 97: 307-312.

 Marra, M.A., Prasad, S.S., Baillie, D.L. (1993) Molecular analysis of two genes between let-653 and let-56 in the unc-22(IV) region of Caenorhabditis elegans. Mol. Gen. Genet. 236: 289-298. (Full Text)

 Xue, B., Baillie, D.L, Beckenbach, K., Webster, J.M. (1992) DNA hybridization probes for studying the affinities of three Meloidogyne populations. Fundam. appl. Nematol. 15: 35-41.

 Clark, D.V., Baillie, D.L. (1992) Genetic analysis and complementation by germ-line transformation of lethal mutations in the unc-22 IV region of Caenorhabditis elegans. Mol. Gen. Genet. 232: 97-105. (Full Text)

 Johnsen, R.C., Baillie, D.L. (1991) Genetic Analysis of a Major Segment [LGV(left)] of the Genome of Caenorhabditis elegans. Genetics 129: 735-752. (Full Text)

 Stewart, H.I., Rosenbluth, R.E., Baillie, D.L. (1991) Most ultraviolet irradiation induced mutations in the nematode Caenorhabditis elegans are chromosomal rearrangements. Mutation Research 249: 37-47. (Full Text)

 Prasad, S.S., Harris, L.J., Baillie, D.L., Rose, A.M. (1991) Evolutionarily conserved regions in Caenorhabditis transposable elements deduced by sequence comparison. Genome 34: 6-12. (Full Text)

 Charest, D.L., Clark, D.V., Green, M.E., Baillie, D.L. (1990) Genetic and fine structure analysis of unc-26(IV) and adjacent regions in Caenorhabditis elegans. Mol. Gen. Genet. 221: 459-465. (Full Text)

 Heschl, M.F.P., Baillie, D.L. (1990) Functional elements and domains inferred from sequence comparisons of a heat shock gene in two nematode species. J. Mol. Evol. 31: 3-9. (Full Text)

 Rosenbluth, R.E., Johnsen, R.C., Baillie, D.L. (1990) Pairing for recombination in LGV of Caenorhabditis elegans: A model based on recombination in deficiency heterozygotes. Genetics 124: 615-625. (Full Text)

 Clark, D.V., McKim, K.S., Johnsen, R.C., Baillie, D.L. (1990) Analysis of lethal mutations induced in a mutator strain that activates transposable elements in Caenorhabditis elegans. Genome 33: 109-114. (Full Text)

 Webster, J.M., Anderson, R.V., Baillie, D.L., Beckenbach, K., Curran, J., Rutherford, T.A. (1990) DNA probes for differentiating isolates of the pinewood nematode species complex. Revue de Nétologie 3 (3): 255-263.

 Bhattacharya, D., Baillie, D.L., Druehl, L.D. (1990) Population analysis of the kelp Costaria costata (Phaeophyta) using a polymorphic ribosomal DNA probe. Pl. Syst. Evol. 170: 177-191.

 Prasad, S.S., Baillie, D.L. (1989) Evolutionary conserved coding sequences in the dpy-20 - unc-22 region of Caenorhabditis elegans. Genomics 5: 185-198. (Full Text)

 Heschl, M.F.P., Baillie, D.L. (1989) Characterization of the hsp70 multigene family in Caenorhabditis elegans. DNA 8: 233-243. (Full Text)

 Heschl, M.F.P., Baillie, D.L. (1989) Identification of a heat shock pseudogene in Caenorhabditis elegans. Genome 32: 190-195. (Full Text)

 Fain, R.S., Baillie, D.L., Druehl, L.D. (1988) Repeat and single copy sequences are differentially conserved in the evolution of kelp chloroplast. J. Phycol. 24: 292-302.

 Harris, L.J., Baillie, D.L., Rose, A.M. (1988) Sequence identity between an inverted repeat family of transposable elements in Drosophila and Caenorhabditis. Nucleic Acid Research 16: 5991-5998. (Full Text)

 Clark, D.V., Rogalski, T.M., Donati, L.M., Baillie, D.L. (1988) The unc-22 region of Caenorhabditis elegans: genetic analysis of lethal mutations. Genetics 119: 345-353. (Full Text)

 Johnsen, R.C., Baillie, D.L. (1988) Formaldehyde mutagenesis in Caenorhabditis elegans: Dose-response curve and the analysis of mutational events. Mutation Research 201: 137-147. (Full Text)

 Snutch, T.P., Heschl, M.F.P., Baillie, D.L. (1988) The Caenorhabditis elegans hsp70 gene family: A molecular genetic characterization. Gene 64: 241-255. (Full Text)

 Rosenbluth, R.E., Rogalski, T.M., Johnsen, R.C., Addison, L.M., Baillie, D.L. (1988) Genomic organization in Caenorhabditis elegans: Deficiency mapping on linkage group V (left). Genetical Research 52: 105-118. (Full Text)

 McKim, K.S., Heschl, M.F.P., Rosenbluth, R.E., Baillie, D.L. (1988) Genetic organization of the unc-60 region in Caenorhabditis elegans. Genetics 118: 49-59. (Full Text)

 Baillie, D.L., Beckenbach, K.A., Rose, A.M. (1985) Cloning within the unc-43 unc-31 (IV) interval of the Caenorhabditis elegans genome using Tc1 linkage selection. Can. J. Genet. Cytol. 27: 457-466. (Full Text)

 Rogalski, T.M., Baillie, D.L. (1985) Genetic organization of the unc-22 IV gene and the adjacent region in Caenorhabditis elegans. Mol. Gen. Genet. 201: 409-414. (Full Text)

 Rosenbluth, R.E., Cuddeford, C., Baillie, D.L. (1985) Mutagenesis in Caenorhabditis elegans. II. A spectrum of mutational events induced with 1500 R gamma radiation. Genetics 109: 493-511. (Full Text)

 Curran, J., Baillie, D.L., Webster, J.M. (1985) Use of genomic DNA restriction fragment length differences to identify nematode species. Parasitology 90: 137-144.

 Snutch, T.P., Baillie, D.L. (1984) A high degree of DNA strain polymorphism associated with the major heat shock gene in Caenorhabditis elegans. Mol. Gen. Genet. 195: 329-335. (Full Text)

 Rose, A.M., Baillie, D.L., Curran, J. (1984) Meiotic pairing behavior of two free duplications of linkage group I in Caenorhabditis elegans. Mol. Gen. Genet. 195: 52-56. (Full Text)

 Rosenbluth, R.E., Cuddeford, C., Baillie, D.L. (1983) Mutagenesis in Caenorhabditis elegans: I. A Rapid eukaryotic mutagen test system using the reciprocal translocation, eT1(III;V). Mutation Research 110: 39-48. (Full Text)

 Snutch, T.P., Baillie, D.L. (1983) Alterations in the pattern of gene expression following heat shock in the nematode Caenorhabditis elegans. Can. J. Biochem. Cell Biol. 61: 480-487. (Full Text)

 Rogalski, T.M., Moerman, D.G., Baillie, D.L. (1982) Essential Genes and Deficiencies in the unc-22 IV Region of Caenorhabditis elegans. Genetics 102: 725-736. (Full Text)

 Rose, A.M., Baillie, D.L., Candido, E.P.M., Beckenbach, K.A., Nelson, D. (1982) The linkage mapping of cloned restriction fragment length differences in Caenorhabditis elegans. Mol. Gen. Genet. 188: 286-291. (Full Text)

 Moerman, D.G., Plurad, S., Waterston, R.H., Baillie, D.L. (1982) Mutations in the unc-54 myosin heavy chain gene of C. elegans that alter contractility but not muscle structure. Cell 29: 773-781. (Full Text)

 Rosenbluth, R.E., Baillie, D.L. (1981) The genetic analysis of a recipocal translocation, eTl (III;V), in C. elegans. Genetics 99: 415-428. (Full Text)

 Moerman, D.G., Baillie, D.L. (1981) Formaldehyde mutagenesis in the nematode C. elegans. Mutation Research 80: 273-279. (Full Text)

 Rose, A.M., Baillie, D.L. (1980) Genetic organization of the region around unc-l5(I), a gene affecting paramyosin in C. elegans. Genetics 96: 639-648. (Full Text)

 Rose, A.M., Baillie, D.L. (1979b) A mutation in Caenorhabditis elegans that increases recombination frequency more than threefold. Nature 281: 599-600. (Full Text)

 Rose, A.M., Baillie, D.L. (1979a) The effect of temperature and parental age on recombination frequency and nondisjunction in Caenorhabditis elegans. Genetics 92: 409-418. (Full Text)

 Moerman, D.G., Baillie, D.L. (1979) Genetic organization in Caenorhabditis elegans: Fine structure analysis of the unc-22 gene. Genetics 91: 95-103. (Full Text)

 Poland, B.J., Baillie, D.L. (1978) Cell ploidy in molar placental disease. Teratology.

 Riekki, K., Baillie, J.E., Nair, K.K., Dill, F.J., Poland, B.J., Baillie, D.L. (1977) Rapid determination of polyploidy in human chorionic tissue section. Human Genetics 37: 299-304. (Full Text)

 Candido, E.P.M., Honda, B.M., Baillie, D.L. (1976) Low levels of non-histone chromosomal proteins in trout testis chromatin. F.E.B.S. Letters 6l: 260-262. (Full Text)

 Chovnick, A., Gelbart, M., McCarron, M., Osmond, B., Candido, E.P.M., Baillie, D.L. (1976) Organization of the rosy locus in D. melanogaster: Evidence for a control element adjacent to the xanthine dehydrogenase structural element. Genetics 84: 233-255.

 Honda, B.M., Baillie, D.L., Candido, E.P.M. (1975) Properties of chromatin subunits in developing trout testis. J. Biol. Chem. 250 (12): 4643-4647. (Full Text)

 Honda, B., Baillie, D.L., Candido, E.P.M. (1974) The subunit structure of chromatin: Characteristics of nucleohistone and nucleoprotamine from developing trout testis. F.E.B.S. Letters 48(1): 156-159. (Full Text)

 Griffin, B.E., Baillie, D.L. (1973) Precursors of stable RNA accumulated in mutant of E. coli. F.E.B.S. Letters 34: 273-279. (Full Text)

 Travers, A.A., Baillie, D.L., Pedersen, S. (1973) The effect of DNA conformation on ribosomal RNA synthesis in vitro. Nature New Biol. 243: 161-163.

 Baillie, D.L. (1971) A study of tryptophan pyrrolase mutant suppression in Drosophila melanogaster. Molec. Gen. Genetics 112: 341-353.

 Chovnick, A., Ballantyne, G.H., Baillie, D.L., Holm, D.G. (1970) Gene conversion in higher organisms. I. Half-tetrad analysis of recombination within the rosy cistron of Drosophila melanogaster. Genetics 66: 315-329.

 Finnerty, V., Baillie, D.L., Chovnick, A. (1969) A chemical system for mass collection of virgin females and males. D.I.S. 45: 190.

 Baillie, D.L., Suzuki, D.T., Tarasoff, M. (1968) Temperature-sensitive mutations in Drosophila melanogaster. II. Frequency among second chromosome recessive lethals induced by ethyl methane sulfonate. Can. J. Genet. Cytol. 10: 412-421.

 Suzuki, D.T., Piternick, L.K., Hayashi, S., Tarasoff, M., Baillie, D.L., Erasmus. U. (1967) Temperature-sensitive mutations in Drosophila melanogaster. I. Relative frequencies among x-ray, and chemically induced sex-linked recessive lethals and semi-lethals. Proc. Nat. Acad. Sci. 57: 907-912. (Full Text)

 Singer, K., Chovnick, A., Suzuki, D.T., Baillie, D.L., Hoar, D. (1967) Attempts to induce crossing-over in Drosophila melanogaster males with ovarian extracts. Nature 214 (5087): 503-504. (Full Text)

 Suzuki, D.T., Baillie, D.L., Parry, D. (1966) The origin of multiple crossover chromatids in short genetic intervals in Drosophila melanogaster. Genetics 54: 1359-1371. (Full Text)

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Book Chapters

 Robert Johnsen, Martin Jones, Nathaniel Szewczyk, David Baillie (2008) C. elegans: a model system for studying biological effects of the space environment. Space Stations: Crew, Experiments and Missions. Hauppauge, NY.

 Robert Johnsen and David Baillie. (2007) C. elegans as a Model System For Space Travel. An Anecdotal History of Nematology. Chapter 18, Section IX.

 Hsiang, T. and D.L. Baillie. 2006. Issues in comparative fungal genomics. Chapter 4 in: D.K. Arora, R. Berka and G.B. Singh (eds). Applied Mycology and Biotechnology, Bioinformatics, Volume 6:100-122. Elsevier Science, Amsterdam. 350 pp.

 M.L. Edgley, D.L. Baillie, D.L. Riddle, and A.M. Rose (2006) Genetic balancers (April 6, 2006) Wormbook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.89.1, http://www.wormbook.org. (Full text)

 R.C. Johnsen, D.L. Baillie and A. M. Rose (2004) A Biological Dosimeter for Assaying Genetic Damage due to Radiation Exposure in Space. International Astronautical Congress, Vancouver, Canada, October 2004.

 McKay S.J., Johnsen, R., Khattra, J., Asano, J., Baillie, D.L., Chan, S., Dube, N., Fang, L., Goszczynski, B., Ha, E., Halfnight, E., Hollebakken, R., Huang, P., Hung, K., Jensen, V., Jones, S.J.M., Kai, H., Li, D., Mah, A., Marra, M., McGhee, J., Newbury, R., Pouzyrev, A., Riddle, D.L., Sonnhammer, E., Tian, H., Tu, D., Tyson, J.R., Vatcher, G., Warner, A., Wong, K., Zhao, Z., Moerman, D.G. (2003) Gene Expression Profiling of Cells, Tissues and Developmental Stages of the Nematode C. elegans. Cold Spring Harbor Symposium LXVIII: The Genome of Homo Sapiens, Cold Spring Harbor Press, Cold Spring Harbor, New York, Volume 68, pp. 159-170. (Full Text)

 Johnsen, R.C., Baillie, D.L. (1997) Mutation, in C. elegans II Monograph 33, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, Chapter 4, pp.79-95.

 Edgley, M., Baillie, D.L., Riddle, D.L., Rose, M.L. (1995) Genetic balancers, in Methods in Cell Biology, Vol. 48, Chapter 7, pp. 212-263.

 Rose, A.M., Edgley, M., Baillie, D.L. (1994) Genetic analysis of Caenorhabditis elegans, in NATO Symposium on Plant Parasitic Nematodes, Ed. Bird, D. and Lombardi, A. Advances in Molecular Plant Nematology, p. 19-33.

 Waterston, R.H., Moerman, D.G., Baillie, D.L., Lane, T.R. (1982) Mutations affecting myosin heavy chain accumulation and function in the nematode Caenorhabditis elegans, in Disorders of the Motor Unit, Ed. D. L. Schotland. John Wiley & Sons Ltd. pp 747-760.

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Reviews

 David de Pomerai, Piyush Madhamshettiwar, Charumathi Anbalagan, Matthew Loose, Mainul Haque, John King, D. Kar Chowdhuri, Pradip Sinha, Bob Johnsen and David Baillie. (2009) The stress-response network in animals: proposals to develop a predictive mathematical model. Open Toxicology Journal. Volume 2, 71-76(Full Text)

 Baillie DL, Rose AM. 2000. WABA success: a tool for sequence comparison between large genomes. Genome Res. 2000 Aug;10(8):1071-3.(Full Text)

 Bird, D.M., C.H. Opperman, S.J.M. Jones, D.L. Baillie. 1999. The Caenorhabditis Elegans Genome: A Guide in the Post Genomics Age. Annul. Rev. Phytopathol. 37:247-65. (Full Text)

Heschl, M.F.P., Baillie, D.L. (1990) The hsp-70 multigene family of Caenorhabditis elegans. Comp. Biochem. Physiol. 96B: 633-637. (Full Text)

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